How to reclaim VAT on eBay fees (valid invoice guide)

By Harvinder Singh Dhillon30 October 202511 min read
UK eBay seller at a laptop downloading a monthly VAT invoice to reclaim VAT on seller fees

If you're a VAT-registered eBay seller, the VAT eBay charges on your seller fees is money you can usually claim back. The catch is that you need a valid VAT invoice to do it, and a lot of sellers either can't find theirs or don't realise the rules changed a few years ago.

This guide shows you exactly where eBay's VAT invoice lives, what a valid VAT invoice has to contain, which fees the VAT sits on, and which box on your VAT return the input tax goes in.

It's written for UK-based, VAT-registered sole traders and limited companies selling on eBay.co.uk. If you're not registered for VAT yet, or you're on the Flat Rate Scheme, there are important catches we cover below too.

Can you reclaim VAT on eBay seller fees?

Yes. If you're VAT-registered and you sell as a business, the VAT eBay charges on your seller fees is input tax that you can reclaim on your VAT return, as long as you hold a valid VAT invoice and the fees relate to your taxable business.

The rules on reclaiming VAT are the same as for any other business cost. You can reclaim VAT on things you buy for use in your business if you're VAT-registered, the purchase relates to your taxable supplies, and you keep a valid VAT invoice to back the claim up. (gov.uk: reclaim VAT on business expenses)

eBay fees pass that test cleanly. They're a direct cost of running your selling business, so the VAT on them is recoverable in the normal way.

Does eBay charge UK VAT on seller fees?

Calculator next to VAT paperwork

For most UK business sellers today, yes. eBay bills UK sellers through its UK entity and adds UK VAT at the standard rate of 20% to its seller fees. (gov.uk: VAT rates)

This is the part that trips people up, because it didn't always work this way. Before 1 August 2020, eBay invoiced UK sellers from its Luxembourg entity, with no VAT shown. UK sellers had to self-account for that VAT under the reverse charge. Since eBay moved UK billing to its UK company, the fees now come with UK VAT already on them, and that VAT is what you reclaim.

So if you're reading old forum threads telling you to apply the reverse charge to your eBay fees, check the date. For current UK billing, you treat eBay fees like any other UK supplier invoice with 20% VAT on it.

Which eBay fees have VAT on them?

eBay applies VAT to most of the charges it makes for using the platform. In practice the VAT-bearing fees usually include:

  • Final value fees (the percentage taken when an item sells)
  • Fixed per-order fees
  • Listing and insertion fees
  • Optional listing upgrades and promoted listings
  • Shop subscription fees
  • The regulatory operating fee

The VAT is charged at 20% on the fee. Reclaiming it follows the standard input-tax rules, so the underlying figures and treatment are the same whichever fee you're looking at.

A practical point worth knowing: some pass-through postage charges (for example certain carrier labels bought through eBay) may not carry VAT in the same way, because they're a different type of supply. Don't assume every line on the invoice has 20% VAT on it. Read the invoice and reclaim the VAT that's actually shown, not a flat 1/6th of the total.

Where do I find my eBay VAT invoice?

eBay produces a monthly invoice that breaks down your fees and the VAT charged. You won't get a separate paper invoice in the post, so you need to pull it from your account.

To find it:

  1. Sign in to eBay and go to the Seller Hub.
  2. Open the Payments tab (sometimes shown as Finances).
  3. Find Reports or Monthly invoices.
  4. Select the month you need and download the invoice (usually as a PDF or CSV).

Save a copy somewhere outside eBay, in your bookkeeping records. You must keep VAT records, including the invoices that support your input tax, for at least 6 years. (gov.uk: record keeping (VAT Notice 700/21))

If you use bookkeeping software, this is also where it helps to have eBay feeding in cleanly, so the fee VAT is captured month by month rather than reconstructed at the year end. It's one of the things we sort out for eBay sellers so the input tax isn't left on the table.

What makes an eBay invoice a valid VAT invoice?

To reclaim the VAT, you need to hold a valid VAT invoice, not just a transaction summary. HMRC sets out what a full VAT invoice must show. (gov.uk: VATREC5010, details on a full VAT invoice)

A full VAT invoice must include:

  • A unique sequential invoice number
  • The time of supply (tax point) and the date of issue
  • The supplier's name, address and VAT registration number
  • Your name and address as the customer
  • A description of the goods or services supplied
  • The rate of VAT and the amount excluding VAT for each item
  • The total amount payable excluding VAT
  • The total VAT chargeable, expressed in sterling

Before you claim, check the eBay invoice actually shows eBay's UK VAT registration number and the VAT amount in sterling. That's the detail HMRC will want to see if they ever review your input tax.

There are two thresholds worth knowing about, both from VAT Notice 700:

  • For supplies of £250 or less (VAT-inclusive), a supplier can issue a simplified VAT invoice with fewer details.
  • You can reclaim VAT on small purchases of £25 or less without a VAT invoice, where you can show the supplier is VAT-registered.

(gov.uk: VAT guide (Notice 700)) In practice your eBay monthly invoice usually gives you the full detail anyway, so you rarely need to lean on the simplified-invoice rules for fees.

Which VAT-return box does the input tax go in?

The VAT you reclaim on eBay fees is input tax, so it goes into the input-tax side of your VAT return.

Here's where the eBay numbers land on a standard UK VAT return:

VAT return boxWhat goes hereeBay fees
Box 1VAT due on your salesNot affected by fees
Box 4VAT reclaimed on purchases (input tax)VAT on your eBay seller fees goes here
Box 5Net VAT to pay or reclaimBox 3 minus Box 4
Box 7Total net value of purchases (excluding VAT)The net (ex-VAT) eBay fees go here

So the VAT element of the fees increases your Box 4, and the net fee amount increases your Box 7. You then pay the difference between your output tax (Box 3) and input tax (Box 4).

Remember that VAT returns are filed digitally under Making Tax Digital, which is mandatory for VAT-registered businesses, so the fee VAT needs to flow through MTD-compatible software, not a manual spreadsheet typed straight into the portal. (gov.uk: Making Tax Digital for VAT)

Illustrative example: reclaiming VAT on a month of eBay fees

Illustrative example. Priya runs a homeware shop on eBay as a VAT-registered sole trader, on standard VAT accounting in 2025/26. In one month her eBay monthly invoice shows VAT-bearing fees of £600 plus VAT.

The VAT on those fees is 20% of £600, which is £120. Her invoice total for those fees is £720.

On her VAT return for that quarter, those fees contribute:

  • Box 4 (input tax reclaimed): £120
  • Box 7 (net purchases): £600

If her eBay fees run at roughly that level every month, that's about £360 of reclaimable VAT across the quarter (£120 multiplied by 3). Over a year, at the same run-rate, it's around £1,440 of input tax (£120 multiplied by 12) that she'd lose if she never downloaded the invoices.

The figures are illustrative, but the lesson isn't: the VAT only comes back if you hold the invoice and put it through the return.

What if I'm on the Flat Rate Scheme?

This is the big exception, and it catches a lot of eBay sellers.

If you use the VAT Flat Rate Scheme, you generally cannot reclaim the VAT on your purchases, including eBay fees. That's the trade-off for paying VAT at a single flat percentage of your gross turnover. (gov.uk: VAT Flat Rate Scheme overview)

There's one narrow exception. You can reclaim the VAT on a single purchase of capital expenditure goods where the VAT-inclusive cost is £2,000 or more. eBay seller fees are a running service cost, not capital goods, so they don't qualify. On the Flat Rate Scheme, the VAT on your eBay fees stays unclaimed.

That doesn't automatically mean the scheme is the wrong choice. For some low-cost, high-margin sellers it still works out cheaper overall. But if your eBay fees are large, the lost input tax is a real cost to weigh up. It's exactly the kind of comparison we run for eBay sellers before they commit to a scheme, and our VAT and tax advisory team can model both side by side.

What about the reverse charge and overseas fees?

For current eBay.co.uk billing to UK sellers, the reverse charge generally doesn't apply to your seller fees, because eBay charges UK VAT through its UK entity. You reclaim that VAT as normal input tax.

The reverse charge only comes back into play if you receive a service from an overseas supplier with no UK VAT on it. If that ever happens on a fee, the invoice itself will indicate the reverse charge applies, and you account for the VAT on both sides of your return. For the vast majority of UK eBay sellers, that's not the situation with their monthly fee invoice.

A couple of related points that often get tangled up with fee VAT, but are separate issues:

Keep these mentally separate from fee VAT and the reclaim stays simple.

Frequently asked questions

Do I have to be VAT-registered to reclaim VAT on eBay fees?

Yes. You can only reclaim VAT as input tax if you're VAT-registered. If your taxable turnover hasn't reached the £90,000 registration threshold and you haven't registered voluntarily, you can't reclaim the VAT on your eBay fees, you just bear it as a cost.

Where exactly is the eBay VAT invoice?

In Seller Hub, under the Payments or Finances tab, in Reports or Monthly invoices. Select the month and download it. Keep a copy in your own records for at least 6 years, as HMRC requires.

Can I just reclaim 1/6th of my total eBay charges?

No. Reclaim the VAT actually shown on the invoice. Not every line carries 20% VAT, some pass-through postage charges work differently, so taking a flat 1/6th of the total can overstate your input tax. Use the VAT figure on the invoice.

Can I reclaim VAT on eBay fees on the Flat Rate Scheme?

Generally no. The Flat Rate Scheme replaces normal input tax recovery, so VAT on eBay fees can't be reclaimed. The only exception is a single capital purchase of £2,000 or more including VAT, which fees don't meet.

Can I backdate a claim for VAT on eBay fees I missed?

Often yes, within the normal time limits for correcting input tax, provided you hold the valid VAT invoices. Download the historic monthly invoices from eBay first, then your accountant can work out what's recoverable and how to adjust it on your return.

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Key takeaways

  • VAT-registered eBay sellers can reclaim the 20% VAT on most seller fees as input tax.
  • You need eBay's monthly VAT invoice (from Seller Hub), showing eBay's UK VAT number and the VAT amount.
  • The fee VAT goes in Box 4, and the net fees go in Box 7, of your VAT return.
  • On the Flat Rate Scheme, you generally can't reclaim fee VAT at all.

Not sure you're capturing every pound of reclaimable VAT on your eBay fees, or whether the Flat Rate Scheme is costing you? Book a free call with a Zmartly accountant and we'll review your eBay seller VAT setup end to end.

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